Class: Bio::RestrictionEnzyme::Fragments

Inherits:
Array
  • Object
show all
Defined in:
lib/bio/util/restriction_enzyme.rb

Overview

Bio::RestrictionEnzyme::Fragments inherits from Array.

Bio::RestrictionEnzyme::Fragments is a container for Fragment objects. It adds the methods primary and complement which returns an Array of all respective strands from it's Fragment members in alphabetically sorted order. Note that it will not return duplicate items and does not return the spacing/padding that you would find by accessing the members directly.

Example:

primary = ['attaca', 'g']
complement = ['atga', 'cta']

Note: unrelated to Bio::RestrictionEnzyme::Range::SequenceRange::Fragments

Instance Method Summary (collapse)

Instance Method Details

- (Object) complement



219
# File 'lib/bio/util/restriction_enzyme.rb', line 219

def complement; strip_and_sort(:complement); end

- (Object) primary



218
# File 'lib/bio/util/restriction_enzyme.rb', line 218

def primary; strip_and_sort(:primary); end