Class: Bio::Blast::WU::Report::HSP

Inherits:
Default::Report::HSP show all
Defined in:
lib/bio/appl/blast/wublast.rb

Overview

Bio::Blast::WU::Report::HSP holds information about the hsp (high-scoring segment pair).

Because it inherits Bio::Blast::Default::Report::HSP, please also refer Bio::Blast::Default::Report::HSP.

Instance Attribute Summary (collapse)

Attributes inherited from Default::Report::HSP

#align_len, #bit_score, #evalue, #gaps, #hit_frame, #hit_from, #hit_strand, #hit_to, #hseq, #identity, #midline, #percent_gaps, #percent_identity, #percent_positive, #positive, #qseq, #query_frame, #query_from, #query_strand, #query_to, #score, #stat_method

Method Summary

Methods inherited from Default::Report::HSP

#initialize, method_after_parse_alignment, method_after_parse_score

Constructor Details

This class inherits a constructor from Bio::Blast::Default::Report::HSP

Instance Attribute Details

- (Object) p_sum_n (readonly)

Returns the value of attribute p_sum_n



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# File 'lib/bio/appl/blast/wublast.rb', line 443

def p_sum_n
  @p_sum_n
end

- (Object) pvalue (readonly)

Returns the value of attribute pvalue



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# File 'lib/bio/appl/blast/wublast.rb', line 440

def pvalue
  @pvalue
end