Class: Bio::Map::SimpleMap

Inherits:

Object

• Object
• Bio::Map::SimpleMap

show all

Includes:

ActsLikeMap

Defined in:

lib/bio/map.rb

Overview

my_map1 = Bio::Map::SimpleMap.new('RH_map_ABC (2006)', 'RH', 'cR')
my_map1.add_marker(Bio::Map::Marker.new('marker_a', '17')
my_map1.add_marker(Bio::Map::Marker.new('marker_b', '5')

Instance Attribute Summary (collapse)

• - (Object) length

  Length of the map.

• - (Object) mappings_as_map

  Mappings.

• - (Object) name

  Name of the map.

• - (Object) type

  Type of the map.

• - (Object) units

  Units of the map.

Instance Method Summary (collapse)

• - (SimpleMap) initialize(name = nil, type = nil, length = nil, units = nil) constructor

  Builds a new Bio::Map::SimpleMap object

  ---

  Arguments:

  • name: name of the map

  • type: type of the map (e.g. linkage, radiation_hybrid, cytogenetic, ...)

  • units: unit of the map (e.g. cM, cR, ...)

  Returns

  new Bio::Map::SimpleMap object.

Methods included from ActsLikeMap

#add_mapping_as_map, #contains_marker?

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# File 'lib/bio/map.rb', line 353

def initialize (name = nil, type = nil, length = nil, units = nil)
  @name, @type, @length, @units = name, type, length, units
  @mappings_as_map = Array.new
end

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# File 'lib/bio/map.rb', line 365

def length
  @length
end

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# File 'lib/bio/map.rb', line 371

def mappings_as_map
  @mappings_as_map
end

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# File 'lib/bio/map.rb', line 359

def name
  @name
end

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# File 'lib/bio/map.rb', line 362

def type
  @type
end

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# File 'lib/bio/map.rb', line 368

def units
  @units
end