Class: Bio::PhyloXML::DomainArchitecture

Inherits:

Object

• Object
• Bio::PhyloXML::DomainArchitecture

show all

Defined in:

lib/bio/db/phyloxml/phyloxml_elements.rb

Overview

Instance Attribute Summary (collapse)

• - (Object) domains readonly

  Array of ProteinDomain objects.

• - (Object) length

  Integer.

Instance Method Summary (collapse)

• - (DomainArchitecture) initialize constructor

  A new instance of DomainArchitecture.

• - (Object) to_xml

  Converts elements to xml representation.

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# File 'lib/bio/db/phyloxml/phyloxml_elements.rb', line 851

def initialize
  @domains = []
end

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# File 'lib/bio/db/phyloxml/phyloxml_elements.rb', line 845

def domains
  @domains
end

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# File 'lib/bio/db/phyloxml/phyloxml_elements.rb', line 842

def length
  @length
end

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# File 'lib/bio/db/phyloxml/phyloxml_elements.rb', line 856

def to_xml
  xml_node = LibXML::XML::Node.new('domain_architecture')
  PhyloXML::Writer.generate_xml(xml_node, self,[
        [:attr, 'length'],
        [:objarr, 'domain', 'domains']])
  return xml_node
end