Class: Bio::RestrictionEnzyme::Range::SequenceRange::Fragment

Inherits:

Object

• Object
• Bio::RestrictionEnzyme::Range::SequenceRange::Fragment

show all

Defined in:

lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb

Defined Under Namespace

Classes: DisplayFragment

Instance Attribute Summary (collapse)

• - (Object) size readonly

  Returns the value of attribute size.

Instance Method Summary (collapse)

• - (Object) for_display(p_str = nil, c_str = nil)
• - (Fragment) initialize(primary_bin, complement_bin) constructor

  A new instance of Fragment.

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# File 'lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb', line 22

def initialize( primary_bin, complement_bin )
  @primary_bin = primary_bin
  @complement_bin = complement_bin
end

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# File 'lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb', line 20

def size
  @size
end

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# File 'lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb', line 29

def for_display(p_str=nil, c_str=nil)
  df = DisplayFragment.new
  df.primary = ''
  df.complement = ''

  both_bins = @primary_bin + @complement_bin
  both_bins.each do |item|
    @primary_bin.include?(item) ? df.primary << p_str[item] : df.primary << ' '
    @complement_bin.include?(item) ? df.complement << c_str[item] : df.complement << ' '
  end
  
  df.p_left  = @primary_bin.first
  df.p_right = @primary_bin.last
  df.c_left  = @complement_bin.first
  df.c_right = @complement_bin.last

  df
end