Class: Bio::SOFT::Table

Inherits:

Object

• Object
• Bio::SOFT::Table

show all

Defined in:

lib/bio/db/soft.rb

Overview

Defined Under Namespace

Classes: Header, Row

Instance Attribute Summary (collapse)

• - (Object) header

  Returns the value of attribute header.

• - (Object) header_description

  Returns the value of attribute header_description.

• - (Object) rows

  Returns the value of attribute rows.

Instance Method Summary (collapse)

• - (Object) add_header(line)
• - (Object) add_header_or_row(line)
• - (Object) add_row(line)
• - (Table) initialize constructor

  A new instance of Table.

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# File 'lib/bio/db/soft.rb', line 240

def initialize()
  @header_description = {}
  @header = Header.new
  @rows = []
end

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# File 'lib/bio/db/soft.rb', line 198

def header
  @header
end

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# File 'lib/bio/db/soft.rb', line 199

def header_description
  @header_description
end

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# File 'lib/bio/db/soft.rb', line 200

def rows
  @rows
end

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# File 'lib/bio/db/soft.rb', line 246

def add_header( line )
  raise "Can only define one header" unless @header.empty?      
  @header = @header.concat( parse_row( line ) )  # beware of clobbering this into an Array
  @header.each_with_index do |key, i|
    @header.column_index[key.downcase.to_sym] = i
  end
end

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# File 'lib/bio/db/soft.rb', line 258

def add_header_or_row( line )
  @header.empty? ? add_header( line ) : add_row( line )        
end

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# File 'lib/bio/db/soft.rb', line 254

def add_row( line )
  @rows << Row.new( parse_row( line ), @header )
end