Class: Bio::SQL::Seqfeature

Inherits:

DummyBase

• Object
• ActiveRecord::Base
• DummyBase
• Bio::SQL::Seqfeature

show all

Defined in:

lib/bio/io/biosql/ar-biosql.rb

Instance Method Summary (collapse)

• - (Object) sequence

  get the subsequence described by the locations objects.

• - (Object) translate(*args)

  translate the subsequences represented by the feature and its locations not considering the qualifiers Return a Bio::Sequence::AA object.

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# File 'lib/bio/io/biosql/ar-biosql.rb', line 174

def sequence
  return self.locations.inject(Bio::Sequence::NA.new("")){|seq, location| seq<<location.sequence}
end

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# File 'lib/bio/io/biosql/ar-biosql.rb', line 181

def translate(*args)
  self.sequence.translate(*args)
end