Module: Bio::Shell

Extended by:
Ghost
Included in:
BiorubyHelper
Defined in:
lib/bio/shell/irb.rb,
lib/bio/shell.rb,
lib/bio/shell/web.rb,
lib/bio/shell/demo.rb,
lib/bio/shell/script.rb,
lib/bio/shell/interface.rb,
lib/bio/shell/plugin/das.rb,
lib/bio/shell/plugin/seq.rb,
lib/bio/shell/plugin/soap.rb,
lib/bio/shell/plugin/midi.rb,
lib/bio/shell/plugin/obda.rb,
lib/bio/shell/plugin/psort.rb,
lib/bio/shell/plugin/blast.rb,
lib/bio/shell/plugin/entry.rb,
lib/bio/shell/plugin/codon.rb,
lib/bio/shell/plugin/emboss.rb,
lib/bio/shell/plugin/togows.rb,
lib/bio/shell/plugin/ncbirest.rb,
lib/bio/shell/plugin/flatfile.rb

Overview

bio/shell/plugin/flatfile.rb - plugin for flatfile database

Copyright

Copyright (C) 2005 Toshiaki Katayama <k@bioruby.org>

License

The Ruby License

$Id: flatfile.rb,v 1.13 2007/04/05 23:45:11 trevor Exp $

Defined Under Namespace

Modules: Core, Ghost Classes: ColoredCodonTable, Demo, Irb, Script, Setup, Web

Constant Summary

Constants included from Core

Core::BIOFLAT, Core::CONFIG, Core::DATADIR, Core::ESC_SEQ, Core::HISTORY, Core::MARSHAL, Core::MESSAGE, Core::OBJECT, Core::PLUGIN, Core::SCRIPT, Core::SESSION, Core::SHELLDIR

Instance Attribute Summary

Attributes included from Ghost

#cache

Method Summary

Methods included from Ghost

check_marshal, close_history, closing_splash, config_color, config_echo, config_message, config_pager, config_show, config_splash, configure, create_flat_dir, create_real_dir, create_save_dir, create_save_dir_ask, find_flat_dir, load_config, load_config_file, load_history, load_history_file, load_object, load_object_file, load_plugin, load_plugin_dir, load_session, open_history, opening_splash, save_config, save_config_file, save_history, save_history_file, save_object, save_object_file, save_script, save_script_file, save_session, script_begin, script_end, splash_message, splash_message_action, splash_message_action_color, splash_message_color, store_history

Methods included from Core

#ask_yes_or_no, #bioflat_dir, #colors, #config_file, #data_dir, #history_file, #object_file, #plugin_dir, #script_dir, #script_file, #session_dir, #shell_dir