Class: Genus

Inherits:
Taxon
  • Object
show all
Defined in:
app/models/genus.rb

Class Method Summary (collapse)

Instance Method Summary (collapse)

Methods inherited from Taxon

#available?, #convert_asterisks_to_daggers!, #current_valid_name, #excluded?, find_genus_group_by_name, find_name, get_statistics, #get_statistics, #homonym?, #homonym_replaced_by?, #incertae_sedis_in?, #invalid?, massage_count, #rank, statistics, #synonym?, #synonym_of?, #unavailable?, #unidentifiable?, #unresolved_homonym?

Class Method Details

+ (Object) create_from_fixup(attributes) 



71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
 
# File 'app/models/genus.rb', line 71

def self.create_from_fixup attributes
  name = attributes[:name]
  fossil = attributes[:fossil] || false
  subfamily_id = attributes[:subfamily_id]
  tribe_id = attributes[:tribe_id]
  subfamily_id = Tribe.find(tribe_id).subfamily_id if tribe_id.present?

  genus_group = Taxon.find_genus_group_by_name name
  if genus_group
    genus_group.update_attribute :tribe_id, tribe_id
    Progress.log "FIXUP updated tribe for #{genus_group.type} #{genus_group.full_name}"
  else
    genus_group = Genus.create! name: name, status: 'valid', fossil: fossil, subfamily_id: subfamily_id,
      tribe_id: tribe_id
    Progress.log "FIXUP created genus #{genus_group.full_name}"
  end

  genus_group
end

+ (Object) import(data) 



34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
 
# File 'app/models/genus.rb', line 34

def self.import data
  transaction do
    protonym = Protonym.import data[:protonym]

    headline_notes_taxt = Importers::Bolton::Catalog::TextToTaxt.convert(data[:note])
    attributes = {
      subfamily: data[:subfamily],
      tribe: data[:tribe],
      name: data[:name],
      fossil: data[:fossil] || false,
      status: data[:status] || 'valid',
      synonym_of: data[:synonym_of],
      protonym: protonym,
      headline_notes_taxt: headline_notes_taxt,
    }
    attributes.merge! data[:attributes] if data[:attributes]
    if data[:type_species]
      type_species_taxt = Importers::Bolton::Catalog::TextToTaxt.convert(data[:type_species][:texts])
      attributes[:type_taxon_taxt] = type_species_taxt
    end
    genus = create! attributes
    data[:taxonomic_history].each do |item|
      genus.taxonomic_history_items.create! taxt: item
    end

    type_species = data[:type_species]
    if type_species
      target_name = type_species[:genus_name]
      target_name << ' (' << type_species[:subgenus_epithet] + ')' if type_species[:subgenus_epithet]
      target_name << ' '  << type_species[:species_epithet]
      ForwardReference.create! source_id: genus.id, target_name: target_name, fossil: type_species[:fossil]
    end

    genus
  end
end

Instance Method Details

- (Object) children 



12
13
14
 
# File 'app/models/genus.rb', line 12

def children
  species
end

- (Object) full_label 



16
17
18
 
# File 'app/models/genus.rb', line 16

def full_label
  "<i>#{full_name}</i>"
end

- (Object) full_name 



20
21
22
 
# File 'app/models/genus.rb', line 20

def full_name
  name
end

- (Object) siblings 



28
29
30
31
32
 
# File 'app/models/genus.rb', line 28

def siblings
  tribe && tribe.genera ||
  subfamily && subfamily.genera.without_tribe.all ||
  Genus.without_subfamily.all
end

- (Object) statistics 



24
25
26
 
# File 'app/models/genus.rb', line 24

def statistics
  get_statistics [:species, :subspecies]
end