Class: Bio::NeXML::Otu

Inherits:

Object

• Object
• Bio::NeXML::Otu

show all

Includes:

Mapper

Defined in:

lib/bio/db/nexml/taxa.rb

Overview

taxon1 = Bio::NeXML::Otu.new( 'taxon1', :label => 'Label for taxon1' )
taxon1.id    #=> 'taxon1'
taxon1.label #=> 'Label for taxon1'
taxon1.otus  #=> otus object they belong to; see docs for Otus

Constant Summary

@@writer =

Bio::NeXML::Writer.new

Instance Attribute Summary (collapse)

• - (Object) id

  A file level unique identifier.

• - (Object) label

  A human readable description.

Instance Method Summary (collapse)

• - (Otu) initialize(id, options = {}, &block) constructor

  Create a new otu.

• - (Object) to_xml

Methods included from Mapper

#properties

otu = Bio::NeXML::Otu.id( 'o1' )
otu = Bio::NeXML::Otu.id( 'o1', :label => 'A label' )

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# File 'lib/bio/db/nexml/taxa.rb', line 32

def initialize( id, options = {}, &block )
  @id = id
  properties( options ) unless options.empty?
  block.arity < 1 ? instance_eval( &block ) : block.call( self ) if block_given?
end

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# File 'lib/bio/db/nexml/taxa.rb', line 16

def id
  @id
end

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# File 'lib/bio/db/nexml/taxa.rb', line 19

def label
  @label
end

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# File 'lib/bio/db/nexml/taxa.rb', line 38

def to_xml
  @@writer.create_node( "otu", @@writer.attributes( self, :id, :label ) )
end